Cottage Cheese Protein Pasta Bake

Featured in: Warm Skillet & Pan Suppers

This protein-packed pasta bake combines tender al dente penne with a rich ground beef and tomato sauce, creamy cottage cheese, and bubbling mozzarella for a hearty, satisfying dish. Perfect for meal prep or family dinners, it delivers 41g of protein per serving while maintaining incredible flavor. The cottage cheese adds unexpected fluffiness and protein without heaviness, while the golden, bubbling cheese topping creates an irresistible finish.

Updated on Sun, 01 Feb 2026 09:42:00 GMT
Golden-brown Cottage Cheese Protein Pasta Bake with Ground Beef emerges from the oven, featuring bubbly mozzarella and golden edges on the pasta. Save
Golden-brown Cottage Cheese Protein Pasta Bake with Ground Beef emerges from the oven, featuring bubbly mozzarella and golden edges on the pasta. | dunewhisk.com

My neighbor knocked on my door one Tuesday evening holding an empty casserole dish and asking what I'd baked the night before. The smell had drifted through the hallway, she said, and her kids wouldn't stop asking about it. I laughed and told her it was just pasta, but she insisted it smelled like something special. That's when I realized this cottage cheese protein bake had become more than a weeknight dinner—it had become the dish people noticed.

I started making this after a gym phase when I was tired of plain chicken and rice. I wanted comfort food that didn't undo my effort, and this bake delivered. My brother came over one Sunday, saw me pull it from the oven, and said it looked like something from a restaurant. He had three servings and didn't believe me when I told him how much protein was in it.

Ingredients

  • Penne or rigatoni (12 ounces): The ridges and tubes catch the sauce and cheese, creating pockets of flavor in every forkful; undercook it slightly so it doesn't turn mushy in the oven.
  • Lean ground beef (1 pound): Using 85% lean keeps it juicy without leaving a pool of grease; break it into small crumbles for even distribution.
  • Low-fat cottage cheese (1 cup): This is the secret protein boost that melts into creamy, tangy richness and binds everything together without heaviness.
  • Parmesan cheese (½ cup, grated): Adds a sharp, salty depth that balances the sweetness of the tomatoes and amplifies the savory notes.
  • Part-skim mozzarella (1 cup, shredded, divided): Half gets stirred in for creaminess, half goes on top for that golden, bubbly crust we all crave.
  • Yellow onion (1 medium, finely chopped): Builds the flavor foundation; cook it until translucent and sweet, not browned and bitter.
  • Garlic (2 cloves, minced): Just 30 seconds in the pan releases its aroma without burning; fresh is always better than jarred here.
  • Crushed tomatoes (14 ounces): Provides a chunky, rustic texture that clings to the pasta; San Marzano tomatoes make it even better.
  • Tomato paste (6 ounces): Concentrated umami that thickens the sauce and deepens the color; coat the beef with it before adding liquids.
  • Beef broth or water (½ cup): Loosens the sauce just enough to coat the pasta without making it soupy; broth adds extra savory richness.
  • Olive oil (1 tablespoon): Prevents sticking and carries the flavors of the aromatics throughout the skillet.
  • Dried oregano (1 teaspoon): Classic Italian herb that tastes like Sunday dinners and fills the kitchen with warmth.
  • Dried basil (1 teaspoon): Adds a sweet, peppery note that complements the tomatoes perfectly.
  • Red pepper flakes (½ teaspoon, optional): A gentle heat that lingers on the back of your tongue; skip it if you're serving kids.
  • Salt and black pepper: Season at every stage so the flavor builds in layers, not all at once.
  • Fresh parsley or basil leaves: A bright, herby finish that makes the dish look as good as it tastes.

Instructions

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Get the oven ready:
Preheat to 375°F and grease a 9x13-inch baking dish so the edges don't stick. This gives you time to work without rushing.
Boil the pasta:
Cook it just until al dente, about 1 to 2 minutes less than the package says, because it will continue cooking in the oven. Drain it and set it aside while you build the sauce.
Sauté the aromatics:
Heat olive oil in a large skillet, add the onion, and cook until it turns soft and translucent, about 3 to 4 minutes. Stir in the garlic and let it cook for just 30 seconds until your kitchen smells amazing.
Brown the beef:
Add the ground beef, breaking it into small crumbles with a wooden spoon, and cook until no pink remains, about 6 to 8 minutes. Drain any excess fat if you like.
Build the sauce:
Stir in the tomato paste to coat the beef, then add crushed tomatoes, broth, oregano, basil, red pepper flakes, salt, and pepper. Let it simmer on low for 8 to 10 minutes, stirring now and then, until it thickens and the flavors meld.
Combine everything:
In a large bowl, toss the drained pasta with the beef sauce, cottage cheese, Parmesan, and half the mozzarella. Mix gently until everything is evenly coated and creamy.
Assemble the bake:
Spread the pasta mixture into the prepared dish and sprinkle the remaining mozzarella over the top. This creates that golden, bubbly crust.
Bake until golden:
Slide it into the oven and bake for 20 to 25 minutes, until the cheese is melted, bubbly, and starting to brown at the edges. Your kitchen will smell incredible.
Rest and serve:
Let it sit for 5 minutes after you pull it out so the layers set and you don't burn your mouth. Garnish with fresh parsley or basil before serving.
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Al dente pasta and savory ground beef mingle in this Cottage Cheese Protein Pasta Bake, garnished with fresh green parsley. Save
Al dente pasta and savory ground beef mingle in this Cottage Cheese Protein Pasta Bake, garnished with fresh green parsley. | dunewhisk.com

One night, I served this to friends who claimed they hated cottage cheese. They devoured it, asked for seconds, and didn't believe me when I revealed the secret ingredient. That's when I knew this bake had magic in it—it wins over skeptics and becomes a request at every gathering.

Making It Your Own

I've swapped ground beef for turkey when I wanted something lighter, and I've stirred in handfuls of fresh spinach when I felt like sneaking in greens. Sometimes I add diced bell peppers to the sauce for sweetness and crunch. My cousin uses gluten-free pasta and says it works perfectly. This bake is forgiving and adaptable, so play with it based on what you have or what sounds good.

Storing and Reheating

Leftovers last up to three days in an airtight container in the fridge. I reheat single portions covered in the microwave or warm the whole dish in a low oven to keep the cheese from drying out. If you're meal prepping, portion it into containers right after it cools and grab one for lunch all week. It reheats better than most casseroles because the cottage cheese keeps everything moist.

Serving Suggestions

I usually serve this with a simple green salad dressed in lemon vinaigrette to cut through the richness. Garlic bread is always a hit, but it's honestly hearty enough to stand alone. On busy nights, I skip the sides entirely and just let the bake be the star.

  • Pair it with a crisp Caesar salad or roasted vegetables for balance.
  • Serve garlic bread or crusty Italian bread for sopping up the sauce.
  • A glass of red wine or sparkling water with lemon makes it feel like a special meal.
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Spoon a generous serving of this hearty Cottage Cheese Protein Pasta Bake with ground beef onto a white plate next to garlic bread. Save
Spoon a generous serving of this hearty Cottage Cheese Protein Pasta Bake with ground beef onto a white plate next to garlic bread. | dunewhisk.com

This cottage cheese protein pasta bake has earned its place in my regular rotation because it feeds a crowd, packs serious nutrition, and tastes like pure comfort. Make it once, and I promise it'll become one of those recipes you return to again and again.

Your Questions Answered

Can I substitute the ground beef with another protein?

Yes, ground turkey or chicken work beautifully for a leaner option. You can also use Italian sausage for more robust flavor, or go meatless with lentils or plant-based crumbles.

Why use cottage cheese instead of ricotta?

Cottage cheese provides significantly more protein while staying lower in fat and calories. It creates a lighter, fluffier texture and blends seamlessly into the pasta while boosting nutritional value.

Can I prepare this dish ahead of time?

Absolutely. Assemble the entire bake up to 24 hours in advance, cover tightly, and refrigerate. When ready to serve, let it sit at room temperature for 20 minutes, then bake as directed, adding 5-10 minutes to the cooking time.

How do I prevent the pasta from becoming mushy?

Cook the pasta 1-2 minutes less than package directions to keep it al dente. It will continue cooking in the oven, so undercooking initially ensures perfect texture in the final dish.

What vegetables can I add to this bake?

Spinach, zucchini, bell peppers, and mushrooms all work wonderfully. Sauté them with the onions or stir in fresh spinach just before baking. Aim for 1-2 cups of chopped vegetables per bake.

How should I store and reheat leftovers?

Store in an airtight container in the refrigerator for up to 3 days. Reheat individual portions in the microwave covered with a damp paper towel, or warm the entire dish covered with foil at 350°F for 20-25 minutes.

Cottage Cheese Protein Pasta Bake

Hearty pasta layered with beef-tomato sauce, cottage cheese, and melted mozzarella for ultimate comfort.

Time to Prep
20 min
Time to Cook
50 min
Overall Time
70 min
Created by Ella Richardson

Cuisine Category Warm Skillet & Pan Suppers

Skill Level Medium

Cuisine Type American/Italian

Portion Size 6 Number of Portions

Diet Preferences None specified

What You'll Need

Pasta

01 12 ounces penne or rigatoni pasta

Meat & Dairy

01 1 pound lean ground beef, 85% lean or higher
02 1 cup low-fat cottage cheese
03 ½ cup grated Parmesan cheese
04 1 cup shredded part-skim mozzarella cheese, divided

Vegetables & Aromatics

01 1 medium yellow onion, finely chopped
02 2 cloves garlic, minced

Sauce

01 1 can (14 ounces) crushed tomatoes
02 1 can (6 ounces) tomato paste
03 ½ cup beef broth or water

Pantry & Spices

01 1 tablespoon olive oil
02 1 teaspoon dried oregano
03 1 teaspoon dried basil
04 ½ teaspoon red pepper flakes, optional
05 Salt and freshly ground black pepper to taste

Garnish

01 Fresh parsley or basil leaves for garnish

How To Make It

Step 01

Prepare Baking Vessel: Preheat oven to 375°F. Lightly grease a 9×13-inch baking dish with cooking spray or oil.

Step 02

Cook Pasta: Bring a large pot of salted water to boil. Cook pasta until al dente, approximately 1 to 2 minutes less than package directions. Drain and set aside.

Step 03

Sauté Aromatic Base: Heat olive oil in a large skillet over medium heat. Add onion and sauté until translucent, 3 to 4 minutes. Stir in minced garlic and cook for 30 seconds until fragrant.

Step 04

Brown Ground Beef: Add ground beef to skillet, breaking into small pieces. Cook until browned and no longer pink, 6 to 8 minutes. Drain excess fat if desired.

Step 05

Build Tomato-Beef Sauce: Stir in tomato paste to coat beef. Add crushed tomatoes and beef broth. Mix in oregano, basil, red pepper flakes if using, salt, and pepper. Simmer on low for 8 to 10 minutes, stirring occasionally.

Step 06

Combine Pasta Mixture: In a large bowl, combine drained pasta, beef-tomato sauce, cottage cheese, Parmesan cheese, and half of the mozzarella. Toss gently until evenly mixed.

Step 07

Assemble Bake: Spread pasta mixture into prepared baking dish. Sprinkle remaining ½ cup mozzarella over the top.

Step 08

Bake Until Golden: Bake for 20 to 25 minutes, or until cheese is melted, bubbly, and golden at the edges.

Step 09

Rest and Serve: Remove from oven and let rest for 5 minutes. Garnish with chopped parsley or basil before serving.

Tools You Need

  • Large pot
  • Large skillet
  • Mixing bowl
  • 9×13-inch baking dish
  • Wooden spoon or spatula
  • Colander

Allergy Details

Review each item for allergens and speak with a healthcare provider if you're not sure.
  • Contains wheat from pasta
  • Contains milk from cottage cheese, Parmesan, and mozzarella
  • May contain soy from cheese and pasta products

Nutrition Info (per portion)

Nutritional values are for reference and don't substitute for professional guidance.
  • Calorie Count: 575
  • Fats: 20 g
  • Carbohydrates: 56 g
  • Proteins: 41 g